MYOGLOBIN CONCLUSIONS
1. Volume rendering based on excluded volumes offers a useful method to access
the true amount of space available to CO after dissociation.
* Excluded volumes indicate three likely B sites: B1, B2 and the Heme
pocket H
* The B1 site is consistent with the 31o spectral polarization
of CO, were as, the B2 and H sites are not consistent
* Potential B sites are surrounded by amino acids whose mutations cause
large kinetic effects.
2. The CO frequency shifts may be interpreted in terms of the relative
stabilization of three resonance structures:
(1)
+1:C-:-1 (red) (2) :C=: (red) (3)
-1:C[equivalence]O:+1 (blue)
* In the B1 and H sites the CO's carbon is in Van der Waals contact with
electron rich Phe stabilizing structure (1) and causing a red shift
* Van der Waals contact in the B2 site with Ile 28 and Gly 25 indicates a
blue shift.
3. Energy minimized carboxy myoglobin structures indicate the Fe-C-O bond takes
on a linear tilted structure rather than a bent structure.
4. Molecular dynamic simulations of the A-state describe a constantly changing
N-Fe-C-O dihedral angle. Two preferential conformations are detected
with movement between conformations occuring at temperatures above 50K.